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2001: 147. Pyšek P., Prach K., Müllerová J. & Joyce C.B. (2001): The role of vegetation succession in ecosystem restoration: Introduction. – Appl. Veget. Sci. 4: 1–4. [1]..
2001: 27. Bímová K. & Mandák B. (2001): Nová jihočeská lokalita vstavače osmahlého (Orchis ustulata). – Roezliana 30: 41–42..
Réblová M. 2000: The genus Chaetosphaeria and its anamorphs. Studies in Mycology 45, 149 - 168.
Réblová M. & Barr M.E. 2000: The genus Acanthostigma (Tubeufiaceae, Pleosporales). Sydowia 52, 258 - 285.
Réblová M. & Gams W. 2000: Life-history of Ascomycetes: Two new species of Chaetosphaeria with Chloridium and Chloridium-Dictyochaeta anamorphs. 42, 129 - 138.
Réblová M. & Winka K. 2000: Phylogeny of Chaetosphaeria and its anamorphs based on morphological and molecular data. Mycologia 92, 939 - 954.
2000: Brabec, J. - Pyšek, P. Establishment and survival of three invasive taxa of the genus Reynoutria (Polygonaceae) in mesic mown meadows: a field experimental study. Folia Geobotanica, 35, 27-42 (2000)..
2000: Effectiveness of indigenous and non-indigenous isolates of arbuscular mycorrhizal fungi in soils from degraded ecosystems and man-made habitats. Applied Soil Ecology 14, 201 - 211.
2000: Cheilanthes Swartz, Alcea L., Plantago L..
2000: Richardson, D. M. - Pyšek, P. - Rejmánek, M. - Barbour, M. G. - Panetta, F. D. - West, C. J. Naturalization and invasion of alien plants: concepts and definitions. Diversity and Distributions, 6, 93-107 (2000)..
2000: Rod Oxycoccus (klikva) v Krkonoších – taxonomická revize, rozšíření a cenologie jednotlivých druhů a ploidních úrovní (předběžné výsledky)..
1999: Proceedings 14 th Symposium IAC, Lammi 1998. Schweizerbartsche Verlagsbuchhandlung, 1 - 382.
Kirschner J., Novara L. J., Novikov V. S., Snogerup S. & Kaplan Z. 1999: Supraspecific division of the genus Juncus (Juncaceae). Folia Geobotanica 34, 377 - 390.
1999: Malcová, R., Vosátka, M., Albrechtová, J.: Influence of arbuscular mycorrhizal fungi and simulated acid rain on the growth and coexistence of the grasses Calamagrostis villosa and Deschampsia flexuosa. Plant and Soil 207, 45 - 57.
1999: Mandák, B. - Pyšek, P. Effects of plant density and nutrient levels on fruit polymorphism in Atriplex sagittata. Oecologia, 119, 63-72 (1999)..
1999: Mandák, B. - Pyšek, P. How does density and nutrient stress affect allometry and fruit production in the heterocarpic species Atriplex sagittata (Chenopodiaceae)? Canadian Journal of Botany, 77, 1106-1119 (1999)..
1999: Prach, K. - Pyšek, P. - Šmilauer, P. Prediction of vegetation succession in human-disturbed habitats using an expert system. Restoration Ecology, 7 [1] 15-23 (1999)..
1999: Prach K. & Pyšek P. (1999): How do species dominating in succession differ from the others? – J. Veget. Sci., Uppsala, 10: 383–392. [10]..
1999: Puntieri, J. G. - Pyšek, P. Why the biomass of over-crowded populations of Galium aparine L. does not increase during density-dependent mortality? An experimental approach. Flora, 194, 297-307 (1999)..
1999: Vosátka, M. - Gryndler, M. Treatment with culture fractions from Pseudomonas putida modifies the development of Glomus fistulosum mycorrhiza and the response of potato and maize plants to inoculation. Applied Soil Ecology, 11, 245-251 (1999)..