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2001: Pyšek P., Prach K., Joyce C. B., Mucina L., Rapson G. L. & J. Müllerová (2001) (eds.): The role of vegetation succession in ecosystem restoration. – Appl. Veget. Sci. 4: 1–114. [2]..
2001: Pyšek, P. - Tichý, L. Rostlinné invaze. 1. vyd. Brno, Rezekvítek 2001. - 42 s..
2001: Pyšek, P. Zákonitosti rostlinných invazí. In: Rostlinné invaze. - (Ed. Pyšek, P.; Tichý, L.). - 1.Brno, Rezekvítek 2001. - S. 3-9..
2001: Pyšek, P. Zlatobýl kanadský, z. obrovský - Solidago canadensis L., S. gigantea Aiton. In: Rostlinné invaze. - (Ed. Pyšek, P.; Tichý, L.). - 1.Brno, Rezekvítek 2001. - S. 39-40..
2001: 147. Pyšek P., Prach K., Müllerová J. & Joyce C.B. (2001): The role of vegetation succession in ecosystem restoration: Introduction. – Appl. Veget. Sci. 4: 1–4. [1]..
2001: 27. Bímová K. & Mandák B. (2001): Nová jihočeská lokalita vstavače osmahlého (Orchis ustulata). – Roezliana 30: 41–42..
2000: Brabec, J. - Pyšek, P. Establishment and survival of three invasive taxa of the genus Reynoutria (Polygonaceae) in mesic mown meadows: a field experimental study. Folia Geobotanica, 35, 27-42 (2000)..
2000: Richardson, D. M. - Pyšek, P. - Rejmánek, M. - Barbour, M. G. - Panetta, F. D. - West, C. J. Naturalization and invasion of alien plants: concepts and definitions. Diversity and Distributions, 6, 93-107 (2000)..
1999: Mandák, B. - Pyšek, P. Effects of plant density and nutrient levels on fruit polymorphism in Atriplex sagittata. Oecologia, 119, 63-72 (1999)..
1999: Mandák, B. - Pyšek, P. How does density and nutrient stress affect allometry and fruit production in the heterocarpic species Atriplex sagittata (Chenopodiaceae)? Canadian Journal of Botany, 77, 1106-1119 (1999)..
1999: Prach, K. - Pyšek, P. - Šmilauer, P. Prediction of vegetation succession in human-disturbed habitats using an expert system. Restoration Ecology, 7 [1] 15-23 (1999)..
1999: Prach K. & Pyšek P. (1999): How do species dominating in succession differ from the others? – J. Veget. Sci., Uppsala, 10: 383–392. [10]..
1999: Puntieri, J. G. - Pyšek, P. Why the biomass of over-crowded populations of Galium aparine L. does not increase during density-dependent mortality? An experimental approach. Flora, 194, 297-307 (1999)..
Snow A. A., Travis S. E., Wildová R., Fér T., Sweeeny P. M., Marburger J. E., Windels S., Kubátová B., Goldberg D. E. & Mutegi E. 12: Species-specific SSR alleles for studies of hybrid cattails (Typha latifolia × T. angustifolia; Typhaceae) in North America. American Journal of Botany 2010, 2061 - 2067. doi:10.3732/ajb.1000187
: Bímová, K. - Mandák, B. - Pyšek, P. Experimental study of vegetative regeneration in four invasive Reynoutria taxa (Polygonaceae). Plant Ecology, 166, 1-11 (2003)..