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Krahulec F., Krahulcová A., Fehrer J., Bräutigam S. & Schuhwerk F. 2008: The structure of the agamic complex of Hieracium subgen. Pilosella in the Šumava Mts and its comparison with other regions in Central Europe. Preslia 80, 1 - 26.
Fehrer J., Gemeinholzer B., Chrtek J. Jr & Bräutigam S. 2007: Incongruent plastid and nuclear DNA phylogenies reveal ancient intergeneric hybridization in Pilosella hawkweeds (Hieracium, Cichorieae, Asteraceae). Molecular Phylogenetics and Evolution 42, 347 - 361.
Fehrer J., Krahulcová A., Krahulec F., Chrtek J. Jr., Rosenbaumová R. & Bräutigam S. 2007: Evolutionary aspects in Hieracium subgenus Pilosella. In: Grossniklaus U., Hörandl E., Sharbel T., van Dijk P. (eds.) Apomixis: Evolution, Mechanisms and Perspectives. Regnum Vegetabile, Koeltz, Königstein. 147, 359 - 390.
Kaplan Z. & Fehrer J. 2007: Molecular evidence for a natural primary triple hybrid in plants revealed from direct sequencing. Annals of Botany 99, 1213 - 1222.
Mahelka V., Fehrer J., Krahulec F. & Jarolímová V. 2007: Recent natural hybridization between two allopolyploid wheatgrasses (Elytrigia, Poaceae): Ecological and evolutionary implications. Annals of Botany 100, 249 - 260.
Slavíková-Bayerová Š. & Fehrer J. 2007: New species of the Lepraria neglecta group (Stereocaulaceae, Ascomycota) from Europe. Lichenologist 39, 319 - 327.
Fehrer J. 2006: Ähnlichkeiten - Molekularbiologie. In: Junker, R., Scherer, S. (eds.) Evolution - ein kritisches Lehrbuch. 6th edition. Weyel, Berlin. ISBN 3-921046-10-6, 176 - 181.
Kaplan Z. & Fehrer J. 2006: Comparison of natural and artificial hybridization in Potamogeton. Preslia 78, 303 - 316.
Krak K., Fehrer J. & Chrtek J. 2006: Molecular tools for inferring phylogeny in Hieracium. Vreš B. & Babij V. (eds.), 9th International Hieracium Workshop, Trenta (Julian Alps), Slovenia, 6 - 11 September, 2006. Abstracts of lectures and posters. - Jovan Hadþi Institute of Biology, Scientific Research Centre SASA, Ljubljana, ISBN 961-6568-61-2, 9 - 10.
Wilson L.M., Fehrer J., Bräutigam S. & Grosskopf G. 2006: A new invasive hawkweed, Hieracium glomeratum (Lactuceae, Asteraceae), in the Pacific Northwest. Canadian Journal of Botany 84, 133 - 142.
Bayerová Š., Kukwa M. & Fehrer J. 2005: A new species of Lepraria (Lichenized Ascomycetes) from Europe. Bryologist 108, 131 - 138.
Mráz P., Chrtek J. jun., Fehrer J. & Plačková I. 2005: Rare recent natural hybridization in Hieracium s.str. – evidence from morphology, allozymes and chloroplast DNA. 255, 177 - 192.
Kaplan Z. & Fehrer J. 2004: Evidence for the hybrid origin of Potamogeton ×cooperi (Potamogetonaceae): traditional morphology-based taxonomy and molecular techniques in concert. Folia Geobotanica 39, 431 - 453.
Krahulec F., Krahulcová A., Fehrer J., Bräutigam S., Plačková I. & Chrtek J. jun. 2004: The Sudetic group of Hieracium subgen. Pilosella from the Krkonoše Mts: A synthetic view. Preslia 76, 223 - 243.