Kaplan Z. & Fehrer J. 2013: Molecular identification of hybrids from a former hot spot of Potamogeton hybrid diversity. Aquatic Botany 105, 34 - 40. doi:10.1016/j.aquabot.2012.11.002
Kaplan Z., Jarolímová V. & Fehrer J. 2013: Revision of chromosome numbers of Potamogetonaceae: a new basis for taxonomic and evolutionary implications. Preslia 85, 421 - 482.
Krak K., Caklová P., Chrtek J. & Fehrer J. 2013: Reconstruction of phylogenetic relationships in a highly reticulate group with deep coalescence and recent speciation (Hieracium, Asteraceae). Heredity 110, 138 - 151. doi:10.1038/hdy.2012.100
Vohník M., Mrnka L., Lukešová T., Bruzone M. C., Kohout P. & Fehrer J. 2013: The cultivable endophytic community of Norway spruce ectomycorrhizas from microhabitats lacking ericaceous hosts is dominated by ericoid mycorrhizal Meliniomyces variabilis. Fungal Ecology 6, 281 - 292. doi:10.1016/j.funeco.2013.03.006
Fehrer J. 2012: Das Abenteuer Habichtskräuter: Molekularbiologische Untersuchungen in der Oberlausitz und angrenzenden Gebieten. Berichte der Naturforschenden Gesellschaft der Oberlausitz 20, 43 - 50.
Krak K., Álavarez I., Caklová P., Costa A., Chrtek J. & Fehrer J. 2012: Development of novel low-copy nuclear markers for Hieraciinae (Asteraceae) and their perspective for other tribes. American Journal of Botany 99, 74 - 77. doi:10.3732/ajb.1100416
Sýkorová Z., Börstler B., Zvolenská S., Fehrer J., Gryndler M., Vosátka M. & Redecker D. 2012: Long-term tracing of Rhizophagus irregularis isolate BEG140 inoculated on Phalaris arundinacea in a coal mine spoil bank, using mitochondrial large subunit rDNA markers. Mycorrhiza 22, 69 - 80. doi:10.1007/s00572-011-0375-1
Kaplan Z. & Fehrer J. 2011: Erroneous identities of Potamogeton hybrids corrected by molecular analysis of plants from type clones. Taxon 60, 758 - 766.
Kaplan Z., Fehrer J. & Hellquist C. B. 2011: Potamogeton ×jacobsii (Potamogetonaceae) from New South Wales, Australia – the first Potamogeton hybrid from the Southern Hemisphere. Telopea 13, 245 - 256.
Koltunow A.M.G., Johnson S.D., Rodrigues J.C.M., Okada T., Hu Y., Tsuchiya T., Wilson S., Fletcher P., Ito K., Suzuki G., Mukai Y., Fehrer J. & Bicknell R.A. 2011: Sexual reproduction is the default mode in apomictic Hieracium subgenus Pilosella, in which two dominant loci function to enable apomixis. Plant Journal 66, 890 - 902. doi:10.1111/j.1365-313X.2011.04556.x
Mráz P., Chrtek J. & Fehrer J. 2011: Interspecific hybridization in the genus Hieracium (s. str.) - evidence for bidirectional gene flow and spontaneous allopolyploidization. Plant Systematics and Evolution 293, 237 - 245. doi:10.1007/s00606-011-0441-3
Fehrer J. 2010: Modeling partially asexual plants: Unraveling the mysteries of reproduction. Heredity 104, 421 - 422. doi:10.1038/hdy.2010.12
Fehrer J., Krak K. & Chrtek J. 2009: Intra-individual polymorphism in diploid and apomictic polyploid hawkweeds (Hieracium, Lactuceae, Asteraceae): disentangling phylogenetic signal, reticulation, and noise. BMC Evolutionary Biology 9, 1 - 23. 10.1186/1471-2148-9-239;
Chrtek J., Zahradníček J., Krak K. & Fehrer J. 2009: Genome size in Hieracium subgenus Hieracium (Asteraceae) is strongly correlated with major phylogenetic groups. Annals of Botany 104, 161 - 178. doi:10.1093/aob/mcp107
Kaplan Z. & Fehrer J. 2009: An orphaned clone of Potamogeton ×schreberi in the Czech Republic. Preslia 81, 387 - 397.
Kaplan Z., Fehrer J. & Hellquist C. B. 2009: New hybrid combinations revealed by molecular analysis: The unknown side of North American pondweed diversity (Potamogeton). Systematic Botany 34, 625 - 642.
Fehrer J., Slavíková-Bayerová Š. & Orange A. 2008: Large genetic divergence of new, morphologically similar species of sterile lichens from Europe (Lepraria, Stereocaulaceae, Ascomycota): concordance of DNA sequence data with secondary metabolites. Cladistics 24, 443 - 458.
Krahulec F., Krahulcová A., Fehrer J., Bräutigam S. & Schuhwerk F. 2008: The structure of the agamic complex of Hieracium subgen. Pilosella in the Šumava Mts and its comparison with other regions in Central Europe. Preslia 80, 1 - 26.
Fehrer J., Gemeinholzer B., Chrtek J. Jr & Bräutigam S. 2007: Incongruent plastid and nuclear DNA phylogenies reveal ancient intergeneric hybridization in Pilosella hawkweeds (Hieracium, Cichorieae, Asteraceae). Molecular Phylogenetics and Evolution 42, 347 - 361.
Fehrer J., Krahulcová A., Krahulec F., Chrtek J. Jr., Rosenbaumová R. & Bräutigam S. 2007: Evolutionary aspects in Hieracium subgenus Pilosella. In: Grossniklaus U., Hörandl E., Sharbel T., van Dijk P. (eds.) Apomixis: Evolution, Mechanisms and Perspectives. Regnum Vegetabile, Koeltz, Königstein. 147, 359 - 390.