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Kirschner J., Bartish I., Hroudová Z., Kirschnerová L. & Zákravský P 2004: Contrasting patterns of spatial genetic structure of diploid and triploid populations of the clonal aquatic species, Butomus umbellatus (Butomaceae), in Central Europel. Folia Geobotanica 39 (1), 13 - 26.
Kirschner J. &Štěpánek J. 2004: New sections in Taraxacum. Folia Geobotanica 39, 259 - 274.
Kovář P., Štěpánek J. & Kirschner J. 2004: Clonal diversity of Calamagrostis epigejos (L.) Roth in relation to type of industrial substrate and successional stage. In: Kovář P. (ed.) Natural recovery in human-made deposits in landscape, Academia, Praha, 285 - 293.
Liška J. 2004: Česká a slovenská lichenologická bibliografie XVII. Bryonora 34, 38 - 41.
Liška J. & Soldán Z. 2004: Alien vascular plants recorded from the Barentsburg and Pyramiden settlements, Svalbard. 76, 279 - 290.
Lumbsch H. T., Schmitt I., Palice Z., Wiklund E., Ekman S. & Wedin M. 2004: Supraordinal phylogenetic relationships of Lecanoromycetes based on a Bayesian analysis of combined nuclear and mitochondrial sequences. Molecular Phylogenetics and Evolution 31, 822 - 832.
Morgan-Richards M., Trewick S.A., Chapman H.M. & Krahulcová A 2004: Interspecific hybridization among Hieracium species in New Zealand: evidence from flow cytometry. Heredity 93, 34 - 42.
Palice Z. 2004: Nová lichenologická literatura XIII. Bryonora 33, 50 - 56.
Palice Z. & Printzen C. 2004: Genetic variability in tropical and temperate populations of Trapeliopsis glaucolepidea: Evidence against long-range dispersal in a lichen with disjunct distribution. Mycotaxon 90, 43 - 54.
Palice Z. & Soldán Z. 2004: Lichen and bryophyte species diversity on toxic substrates in the abandoned sedimentation basins of Chvaletice and Bukovina. Palice Z. & Z. Soldán. 2004. Lichen and bryophyte species diversity on toxic substrates in the abandoned sedimentation basins ofIn: Kovář P. (ed.) Natural Recovery of Human-Made Deposits in Landscape (Biotic Interactions and Ore/Ash-Slag Artificial Ecosystems). Academia, Prague., 200 - 221.
Peksa O., Svoboda D., Palice Z., Dětinský R. & Zahradníková M. 2004: Lišejníky. In: Papáček M. (ed.) Biota Novohradských hor: modelové taxony, společenstva a biotopy. Jihočeská Univerzita v Českých Budějovicích, 100 - 104.
Peksa O., Svoboda D., Palice Z., Dětinský R. & Zahradníková M. 2004: Tabulka přehledu lišejníků nalezených v Novohradských horách. In: Papáček M. (ed.) Biota Novohradských hor: modelové taxony, společenstva a biotopy. Jihočeská Univerzita v Českých Budějovicích., 293 - 297.
Réblová M. 2004: Four new species of Chaetosphaeria from New Zealand and redescription of Dictyochaeta fuegiana. Studies in Mycology 50, 171 - 186.
Réblová M., Mostert L., Gams W. & Crous P.W. 2004: New genera in the Calosphaeriales: Togniniella and its anamorph Phaeocrella, and Calosphaeriophora as anamorph of Calosphaeria. Studies in Mycology 50, 533 - 550.
Réblová M. & Seifert K.A 2004: Conioscyphascus, a new ascomycetous genus for holomorphs with Conioscypha anamorphs. Studies in Mycology 50, 95 - 108.
Réblová M. & Seifert K.A. 2004: Cryptadelphia (Trichosphaeriales), a new genus for holomorphs with Brachysporium anamorphs, and clarification of the taxonomic status of Wallrothiella. Mycologia 96, 343 - 367.
Sádlo J. & Pyšek P. 2004: Zelení cizinci a nové krajiny 4. Zelení cizinci přicházejí: hříčky, hry a dramata. Vesmír 83, 200 - 206.
Suda J. 2004: Genome size variation in Central European species of Cirsium (Compositae) and their natural hybrids..
Suda J., Malcová R., Abazid D., Banaš M., Procházka F., Štech M. & Šída O. 2004: Cytotype distribution in Empetrum (Ericaceae) at various spatial scales in the Czech Republic. Folia Geobotanica 39, 161 - 171.
Suda J., Plačková I. & Rosenbaumová R. 2004: Variation in Lamium subg. Galeobdolon (Lamiaceae) – insights from ploidy levels, morphology and isozymes..