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Gutermann W., Conti F., Király G., Kirschner J., Marhold K., Niketič M., Nikolič T., Petrova A., Tan K. & Wraber T. 2011: Proposal to conserve the name Convallaria latifolia Jacq. (Polygonatum latifolium) (Ruscaceae, Liliaceae s.l.) against C. latifolia Mill. Taxon 60, 595 - 596. doi:-
Kirschner J. 2011: Familie Juncaceae Juss. - Binsengewächse. In: Jäger J. Eckehart (ed.) Exkursionsflora von Deutschland, Spektrum Akademischer Verlag Heidelberg, 193 - 204.
Kirschner J. & Kirschnerová L. 2011: Luzula DC in: Bernardo L., Passalacqua N. G. & Peruzzi L. (eds.) Flora vascolara della Calabria - Prodrome. Informatore Botanico Italiano 43, 253 - 255.
Kirschner J. & Kirschnerová L. 2011: Juncus L in: Bernardo L., Passalacqua N. G. & Peruzzi L. (eds.) Flora vascolara della Calabria - Prodrome. Informatore Botanico Italiano 43, 250 - 253.
Kirschner J., Kirschnerová L. & Bartish I. 2011: Conservation Status of Two Isolated Populations of Gentiana verna (Gentianaceae) in the Czech Republic: Insights from an Allozyme Analysis. Phyton - Annales Rei Botanicae 51, 177 - 199.
Kirschner J. & Štěpánek J. 2011: Dandelions in Central Asia: a revision of Taraxacum section Stenoloba. Preslia 83, 491 - 512. doi:-
Kirschner J. & Štěpánek J. 2011: Typification of Leontodon taraxacum L. (=Taraxacum officinale F.H.Wigg.) and the generic name Taraxacum: A review and a new typification proposal. Taxon 60, 216 - 220. doi:-
Rooks F., Jarolímová V., Záveská Drábková L. & Kirschner J. 2011: The elusive Juncus minutulus: a failure to separate tetra- and hexaploid individuals of the Juncus bufonius complex in a morphometric comparison of cytometrically defined groups. Preslia 83, 565 - 589.
Shi Z., Ge X. J., Kilian N., Kirschner J., Štěpánek J., Sukhorukov A. P., Mavrodiev E. V. & Gottschlich G. 2011: Cichorieae. In: Wu, Z. Y., Raven, P. H. & Hong, D. Y. (eds.) Flora of China Volume 20–21 (Asteraceae). Science Press (Beijing) & Missouri Botanical Garden Press (St. Louis), 195 - 353.
Štěpánek J., Kirschner J., Jarolímová V. & Kirschnerová L. 2011: Taraxacum nigricans, T. alpestre and allies in the Taraxacum sect. Alpestria: taxonomy, geography and conservation status. Preslia 83, 537 - 564.
Xuejun G., Kirschner J. & Štěpánek J. 2011: Taraxacum F. H. Wiggers. In: Wu, Z. Y., Raven, P. H. & Hong, D. Y. (eds.) Flora of China Volume 20–21 (Asteraceae). Science Press (Beijing) & Missouri Botanical Garden Press (St. Louis), 270 - 325.
Businský R. & Kirschner J. 2010: Pinus mugo and P. uncinata as Parents of Hybrids. A Taxonomic and Nomenclatural Survey. Phyton - Annales Rei Botanicae 50, 27 - 57.
Štěpánek J., Kirschner J. & Meierott L. 2010: Taraxacum gratum, a New Species of the Section Erythrocarpa from the Transcaucasus. Phyton - Annales Rei Botanicae 50, 59 - 68.
van Dijk P., Kirschner J., Štěpánek J., Baitulin I. O. & Černý T. 2010: Taraxacum koksaghyz Rodin definitely is not an example of overcollecting in the past. A reply to S. Volis et al. (2009). Journal of Applied Botany and Food Quality-Angewandte Botanik 83, 217 - 219.
Grant F., de Jong Y., Kirschner J., Petřík P., Segers H., Sharman M., Tillier S., Watt A. & Young J. (eds) 2009: Strategies in Taxonomy: Research in a Changing World. Report of an e-conference. Institute of Botany, Academy of Sciences of the Czech Republic, Průhonice, 1 - 67.
Kirschner J. 2009: Typification of Juncus mutabilis Lam. Taxon 58, 277 - 279.
Kirschner J. 2009: Typification of Zaluzianskya villosa F. W. Schmidt (Scrophulariaceae-Manuleae). South African Journal of Botany 75, 588 - 590. doi:10.1016/j.sajb.2009.02.176
Záveská Drábková L., Kirschner J., Štěpánek J., Záveský L. & Vlček Č. 2009: Analysis of nrDNA polymorphism in closely related diploid sexual, tetraploid sexual and polyploid agamospermous species. Plant Systematics and Evolution 278, 67 - 85, app.1-11. doi:10.1007/s00606-008-0134-8
Buttler K. P., Hand R. & Kirschner J. 2008: 7. Valeriana-officinalis-Gruppe. Kochia 3, 82 - 86.
Kirschner J. 2008: 150. Familie: Simsengewächse/Juncaceae. In: Fischer M. A., Oswald K. & Adler W., Exkursionsflora für Österreich, Biologiezentrum der OÖ Landesmuseen, Linz, 1091 - 1099.