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Červenková Z. & Münzbergová Z. 2009: Susceptibility of the landscape of the Giant Mountains, Czech Republic, to invasion by Rumex alpinus. Neobiota 8, 75 - 85.
Čtvrtlíková M., Vrba J., Znachor P. & Hekera P. 2009: Effects of aluminium toxicity and low pH on the early development of Isoëtes echinospora. Preslia 81, 135 - 149.
Čuříková M., Látr A. & Vosátka M. 2009: Growth and viability of mycorrhizal extraradical mycelia associated with three temperate orchid species. Biologia 64, 63 - 68. doi:10.2478/s11756-009-0001-2
DAISIE 2009: Handbook of alien species in Europe. Springer, Berlin, 1 - 427.
Danihelka J. 2009: Co říká 11 fytocenologických snímků o vlivu celoplošné přípravy půdy na bylinné patro lužních lesů? (What can 11 vegetation plots say about the influence of ploughing on the herb layer of alluvial forests?) Živa 57, 85 - 86.
Danihelka J. 2009: Hordeum brevisubulatum (Trin.) Link. (Hordeum brevisubulatum (Trin.) Link.) Zprávy České botanické společnosti 44, 267 - 268.
Danihelka J. 2009: Nálezy a ztráty jihomoravských slanisk - hvězdnice sivá. (Discoveries and losses of South Moravian salt marshes - Aster canus.) Živa 57, 107 - 109.
Danihelka J., Niklfeld H. & Šípošová H. 2009: Viola elatior, V. pumila and V. stagnina in Austria, Czechia and Slovakia: a story of decline. Preslia 81, 151 - 171.
Danihelka J., Šmarda P. & Foggi B. 2009: Proposal to reject the name Festuca pannonica (Poaceae). Taxon 58, 295 - 296.
de Bello F., Thuiller W., Lepš J., Choler P., Clement J. Ch., Macek P., Sebastia M. T. & Lavorel S. 2009: Partitioning of functional diversity reveals the scale and extent of trait convergence and divergence. Journal of Vegetation Science 20, 475 - 486. doi:10.1111/j.1654-1103.2009.01042.x
Dixon A. F. G., Honěk A., Keil P., Kotela M. A. A., Šizling A. L. & Jarošík V. 2009: Relationship between the minimum and maximum temperature thresholds for development in insects. Functional Ecology 23, 257 - 264. doi:10.1111/j.1365-2435.2008.01489.x
Dixon C. J., Schönswetter P., Suda J., Wiedermann M. & Schneeweiss G. M. 2009: Reciprocal Pleistocene origin and postglacial range formation of an allopolyploid and its sympatric ancestors (Androsace adfinis group, Primulaceae). Molecular Phylogenetics and Evolution 50, 74 - 83. doi:10.1016/j.ympev.2008.10.009
Doležal J., Matsuki S. & Hara T. 2009: Effects of dwarf-bamboo understory on tree seedling emergence and survival in a mixed-oak forest in northern Japan: a multi-site experimental study. Community Ecology 64, 443 - 453. doi:10.1556/ComEc.10.2009.2.13
Doležal J., Song. J. S., Altman J., Janeček S., Černý T., Šrůtek M. & Kolbek J. 2009: Tree growth and competition in a post-logging Quercus mongolica forest on Mt. Sobaek, South Korea. Ecological Research 24, 281 - 290. doi:10.1007/s11284-008-0505-1
Dostálek J., Weber M., Matula S. & Frantík T. 2009: Planting of different-sized tree transplants on arable soil. Central European Journal of Biology 4, 574 - 584. doi:10.2478/s11535-009-0049-6
Dostál P., Havlíčková V., Jorritsma-Wienk L. D., Eriksson O. & Herben T. 2009: Interspecific competition changes reproductive output but does not increase reproductive costs in a grassland perennial. Basic and Applied Ecology 10, 525 - 534. doi:doi:10.1016/j.baae.2008.12.004
Duchoslav M. & Krahulec F. 2009: Rozšíření druhů rodu česnek (Allium) v České republice. IV. Druhy sekce Allium (A. scorodoprasum, A. rotundum). (Geographical distribution of Allium species in the Czech Republic. IV. Species of sect. Allium (A. scorodoprasum, A. rotundum).) Zprávy České Botanické Společnosti 44, 53 - 88.
Eckstein R. L., Danihelka J. & Otte A. 2009: Variation in life-cycle between three rare and endangered floodplain violets in two regions: implications for population viability and conservation. Biologia 64, 69 - 80. doi:10.2478/s11756-009-0002-1
Ehrlén J. & Münzbergová Z. 2009: Timing of flowering: opposed selection on different fitness components and trait covariation. American Naturalist 173, 819 - 830. doi:10.1086/598492
Ekrt L., Trávníček P., Jarolímová V., Vít P. & Urfus T. 2009: Genome size and morphology of the Dryopteris affinis group in Central Europe. Preslia 81, 261 - 280. http://www.ibot.cas.cz/preslia/P093Ekrt.pdf