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Trojánková, K. & Přibyl, P. 2006: Negative photomovements of desmid Micrasterias rotata as response to strong light. Czech Phycology 6, 135 - 142.
Vrba, J., Kopáček J., Bitl T., Nedoma J., Štrojsová A., Nedbalová L. Kohout L. & Fótt J. 2006: A key role of aluminium in phosphorus availability, food web structure, and plankton dynamics in strongly acidified lakes. Biologia 61, 441 - 451.
Willame R.,Boutte C., Grubisic S., Wilmotte A., Komárek J. & Hoffmann L. 2006: Morphological and molecular characterisation of planktonic cyanobacteria from Belgium and Luxembourg. Journal of Phycology 42, 1312 - 1332.
Björn L.O., Chapin III F.S., Chernov V.Y., Christensen T.R., Huntley B., Ims R., Johansson M., Riedlinger D.J., Jonasson S., Matveyeva N., Oechel W., Panikov N., Shaver G., Elster J, Henttonen H., Jónsdóttir I.S., Laine K., Schaphoff S., Sitch S., Taulavuori E., Taulavuori K. & Zöckler Ch. 2005: Arctic tundra and polar desert ecosystems. In: Arctic climate impact assessement, Cambridge, Cambridge University Press, 243 - 353.
Day J.G., Benson E.E., Harding K., Knowles B., Idowu M., Bremner D., Santos L., Santos F., Friedl T., Lorenz M., Lukesova A., Elster J., Lukavsky J., Herdman M., Rippka R. & Hall T. 2005: Cryopreservation and conservation of microalgae: the development of a pan-european scientific and biotechnological resource (The COBRA project). Cryoletters 26, 231 - 238.
Hoffmann L., Kaštovský J. & Komárek J. 2005: Proposal of cyanobacterial system - 2004. In: Büdel B., Krienitz L., Gärtner G. & Schagerl M. (ed.), Süsswasserflora von Mitteleuropa 19/2, Elsevier/Spektrum Heidelberg, 657 - 660.
Hoffmann L., Komárek J. & Lhotský O. 2005: Cyanobacteria/Cyanophyta - Morphology, Taxonomy, Ecology. Proc. 16th Symposium IAC. Archiv für Hydrobiologie/Algological Studies 117, 1 - 440.
Kaštovská K., Elster J., Stibal M. & Šantrůčková H. 2005: Microbial assemblages in soil microbial succession after glacial retreat in Svalbard (High Arctic). Microbial Ecology 50, 396 - 407.
Komárek J. 2005: Studies on the cyanophytes (Cyanobacteria, Cyanoprkaryota) of Cuba 11. Freshwater Anabena species. Preslia 77, 211 - 234.
Komárek J. & Anagnostidis K. 2005: Cyanoprokaryota. 2 teil. Oscillatoriales. In:Büdel B., Krienitz L., Gärtner G. & Schagerl M. (eds) Süsswasserflora von Mitteleuropa, Band 19/2. Elsevier-Spektrum, Heidelberg, 1 - 759.
Komárek J., Komárková J., Ventura S. & Turicchia S. 2005: Comparison of phenotype and molecular diversity of cyanobacteria from alkaline marshes in Belize, Central America. Phycologia 44, 55 - 56.
Kvíderová, J. & Henley, W.J. 2005: The effect of ampicillin plus streptomycin on growth and photosynthesis of two halotolerant algae. Journal of Applied Phycology 17, 301 - 307.
Lukavský J. 2005: Mikroskopické organismy obývající vodu. (Microscopic organisms inhabitated water.) In: kol.aut., Živel voda, Praha, 82 - 95.
Přibyl P., Cepák V. & Zachleder V. 2005: Alterations of cytoskeletonin the interphase cells of the green alga Spirogyra in response to heavy metals exposure: I. The effect of cadmium. Protoplasma 226, 231 - 240.
Rajaniemi P., Hrouzek P., Kaštovská K., Williame R., Rantala A., Hoffmann L., Komárek J. & Sivonen K. 2005: Phylogenic and morphological evaluation of the genera Anabena, Aphanizomenon, Trichormus and Nostoc (Nostocales, Cyanobacteria). 55, 11 - 26.
Stibal M. & Elster J. 2005: Growth and morphology variation as a response to changing environmental factors in two Arctic species of Raphidonema (Trebouxiophyceae) from snow and soil. Polar Biology 28, 558 - 567.
Šejnohová L., Komárek J., Zapomělová E., Pumann P., Maršálek B. & Babica P. 2005: Interactive key for identification water-bloom forming cyanobacteria. (Interaktivní klíč k určování sinic vodních květů.) CD, Sdruzeni flos-aque, Brno, 1 - 343.
Šetlíková I., Balounová Z., Lukavský J. & Rajchard J. 2005: Nepůvodní druh mechovky na Třeboňsku. (Non-indigenous bryozoan species in the Třeboňsko region.) Živa 53, 172 - 174.
Švadlenková M., Lukavský J. & Kvíderová J. 2005: Radionuklides 137-Cs and 60-Co uptake by freshwater and marine microalgae Chlorella, Navicula, Phaeodactylum. In: Brechignac F., Desmet G. (eds.) Equidosimetry. Springer, Netherlands., 379 - 387.
Komárek J. & Hauer T. 2004-2014: CyanoDB.cz - On-line database of cyanobacterial genera. http://www.cyanodb.cz / PřF JU + BÚ.