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Komárek J. & Joosten T. 2006: Cyanophytes determination course. 1 CD Room, ed. RIZA Lelystad, 379 MB, 1 - 132.
Komárek J., Taton A., Sulek J., Wilmotte A., Kaštovská K. & Elster J. 2006: Ultrastructure and taxonomic position of two species of the cyanobacterial genus Schizothrix. 27, 53 - 62.
Lukavsky J. 2006: Coelastrum pascheri sp. n., a new green alga from lakes of the Bohemian Forest. Biologia 61, 485 - 490.
Lukavský J. & Mikešová A. 2006: Řasy a sinice novohradských klauzur. In: Novohradské hory, příroda, historie, život., Baset Praha, p. 144-147, 144 - 147.
Lukavský J., Moravcová A., Nedbalová L. & Rauch O. 2006: Phytobenthos and water quality of mountain streams in the Bohemian Forest under the influence of recreational activity. Biologia 61, 533 - 542.
Moravcová A., Nedbalová L., Lukavský J. & Rauch O. 2006: Diatom species composition in mountain streams under impact of anthropogenic pollution (Bohemian Forest, Giant Mountains). In: Ács É., Kiss K.T., Padisák J. & Szabó K.É. (eds.): 6th International Symposium Use of algae for Monitoring Rivers. Hungarian Algological Society., 95 - 95.
Nedbalová L., Stuchlík E. & Strunecký O. 2006: Phytoplankton of a high mountain lake (Ľadové Lake, High Tatra Mts): seasonal development and first indications of a response to decreased acid deposition. Biologia 61, 91 - 100.
Nedbalová L., Vrba J., Fott J., Kohout L., Kopáček J., Macek M. & Soldán T. 2006: Biological recovery of the Bohemian Forest lakes from acidification. Biologia 61, 453 - 465.
Nedoma J., & Nedbalová L. 2006: Chlorophyll content of Plešné Lake phytoplankton cells studied with image analysis. Biologia 61, 491 - 498.
Stibal M., Šabacká M. & Kaštovská K. 2006: Microbial Communities on Glacier Surfaces in Svalbard: Impact of Physical and Chemical Properties on Abundance and Structure of Cyanobacteria and Algae. Microbial Ecology 52, 644 - 654.
Šabatská M. & Elster J. 2006: Response of cyanobacteria and algae from Antarctic wetland habitats to freezing and desiccation stress. Polar Biology 30, 31 - 37.
Trojánková, K. 2006: Krásivková flóra CHKO Slavkovský les. Erica 13, 3 - 15.
Trojánková, K. & Přibyl, P. 2006: Negative photomovements of desmid Micrasterias rotata as response to strong light. Czech Phycology 6, 135 - 142.
Vrba, J., Kopáček J., Bitl T., Nedoma J., Štrojsová A., Nedbalová L. Kohout L. & Fótt J. 2006: A key role of aluminium in phosphorus availability, food web structure, and plankton dynamics in strongly acidified lakes. Biologia 61, 441 - 451.
Willame R.,Boutte C., Grubisic S., Wilmotte A., Komárek J. & Hoffmann L. 2006: Morphological and molecular characterisation of planktonic cyanobacteria from Belgium and Luxembourg. Journal of Phycology 42, 1312 - 1332.
Björn L.O., Chapin III F.S., Chernov V.Y., Christensen T.R., Huntley B., Ims R., Johansson M., Riedlinger D.J., Jonasson S., Matveyeva N., Oechel W., Panikov N., Shaver G., Elster J, Henttonen H., Jónsdóttir I.S., Laine K., Schaphoff S., Sitch S., Taulavuori E., Taulavuori K. & Zöckler Ch. 2005: Arctic tundra and polar desert ecosystems. In: Arctic climate impact assessement, Cambridge, Cambridge University Press, 243 - 353.
Day J.G., Benson E.E., Harding K., Knowles B., Idowu M., Bremner D., Santos L., Santos F., Friedl T., Lorenz M., Lukesova A., Elster J., Lukavsky J., Herdman M., Rippka R. & Hall T. 2005: Cryopreservation and conservation of microalgae: the development of a pan-european scientific and biotechnological resource (The COBRA project). Cryoletters 26, 231 - 238.
Hoffmann L., Kaštovský J. & Komárek J. 2005: Proposal of cyanobacterial system - 2004. In: Büdel B., Krienitz L., Gärtner G. & Schagerl M. (ed.), Süsswasserflora von Mitteleuropa 19/2, Elsevier/Spektrum Heidelberg, 657 - 660.
Hoffmann L., Komárek J. & Lhotský O. 2005: Cyanobacteria/Cyanophyta - Morphology, Taxonomy, Ecology. Proc. 16th Symposium IAC. Archiv für Hydrobiologie/Algological Studies 117, 1 - 440.
Kaštovská K., Elster J., Stibal M. & Šantrůčková H. 2005: Microbial assemblages in soil microbial succession after glacial retreat in Svalbard (High Arctic). Microbial Ecology 50, 396 - 407.