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Dixon C. J., Schönswetter P., Suda J., Wiedermann M. & Schneeweiss G. M. 2009: Reciprocal Pleistocene origin and postglacial range formation of an allopolyploid and its sympatric ancestors (Androsace adfinis group, Primulaceae). Molecular Phylogenetics and Evolution 50, 74 - 83. doi:10.1016/j.ympev.2008.10.009
Ekrt L., Trávníček P., Jarolímová V., Vít P. & Urfus T. 2009: Genome size and morphology of the Dryopteris affinis group in Central Europe. Preslia 81, 261 - 280. http://www.ibot.cas.cz/preslia/P093Ekrt.pdf
Hülber K., Sonnleitner M., Flatscher R., Berger A., Dobrovsky R., Niessner S., Nigl T., Schneeweiss G. M., Kubešová M., Rauchová J., Suda J. & Schönswetter P. 2009: Ecological segregation drives fine-scale cytotype distribution of Senecio carniolicus in the Eastern Alps. Preslia 81, 309 - 319. http://www.ibot.cas.cz/preslia/P093Huelber.pdf
Kolář F., Štech M., Trávníček P., Rauchová J., Urfus T., Vít P., Kubešová M. & Suda J. 2009: Towards resolving the Knautia arvensis agg. (Dipsacaceae) puzzle: primary and secondary contact zones and ploidy segregation at landscape and microgeographic scales. Annals of Botany 103, 963 - 974. doi:10.1093/aob/mcp016
Leitch I.J., Kahandawala I., Suda J., Hanson L., Ingrouille M.J., Chase M.W. & Fay M.F. 2009: Genome size diversity in orchids - consequences and evolution. Annals of Botany 104, 469 - 481. doi:10.1093/aob/mcp003
Lepší M., Vít P., Lepší P., Boublík K. & Kolář F. 2009: Sorbus portae-bohemicae and Sorbus albensis, two new endemic apomictic species recognized based on a revision of Sorbus bohemica. Preslia 81, 63 - 89. http://www.ibot.cas.cz/preslia/P09104Lepsi.pdf
Rauchová J. & Suda J. 2009: Zvonek jemný - přehlížená vzácnost naší květeny. Živa 57, 160 - 162.
Slovák M., Urfus T., Vít P. & Marhold K. 2009: The Balkan endemic Picris hispidissima (Compositae): morphology, nuclear DNA content and relationship to the polymorphic P. hieracioides. Plant Systematics and Evolution 278, 187 - 201. doi:10.1007/s00606-008-0137-5
Slovák M., Vít P., Urfus T. & Suda J. 2009: Complex pattern of genome size variation in a polymorphic member of the Asteraceae. Journal of Biogeography 36, 372 - 384. doi:10.1111/j.1365-2699.2008.02005.x
Bastlová D., Květ J., Kubátová B., Trávníček P,. Čurn V. & Suda J. 2008: Variabilita ve fenologii a ploidních hladinách původních a invazních populací kypreje vrbice (Lythrum salicaria) v širším geografickém měřítku. Zprávy České Botanické Společnosti 43, 103 - 112.
Kolář F., Kubešová M., Těšitel J., Koutecký P. 2008: Květena vesnic v CHKO Blanský les. Zprávy ČBS 42, 89 - 104.
Kubátová B., Trávníček P., Bastlová D., Čurn V., Jarolímová V. & Suda J. 2008: DNA-ploidy level variation in native and invasive populations of Lythrum salicaria L. (Lythraceae) at large geographic scale. Journal of Biogeography 35, 167 - 176. doi:10.1111/j.1365-2699.2007.01781.x
Loureiro J., Doležel J., Greilhuber J., Santos C. & Suda J. 2008: Plant flow cytometry - far beyond the stone age. Cytometry Part A 73A, 579 - 580. doi:10.1002/cyto.a.20578
Popp M., Gizaw A., Nemomissa S., Suda J. & Brochmann C. 2008: Colonization and diversification in the African "sky islands" by Eurasian Lychnis L. (Caryophyllaceae). Journal of Biogeography 35, 1016 - 1029. doi:10.1111/j.1365-2699.2008.01902.x
Doležel J., Greilhuber J. & Suda J. 2007: Flow cytometry with plant cells. Analysis of genes, chromosomes and genomes. Wiley-VCH, Weinheim, 1 - 455.
Doležel J., Greilhuber J. & Suda J. 2007: Flow cytometry with plants – an overview. In: Doležel J., Greilhuber J., Suda J. (eds.): Flow Cytometry with Plant Cells. Analysis of Genes, Chromosomes and Genomes. Wiley-VCH, Weinheim, 41 - 65.
Eidesen P. B., Alsos I. G., Popp M., Stensrud Ø., Suda J. & Brochmann C. 2007: Nuclear vs. plastid data: complex Pleistocene history of a circumpolar key species. Molecular Ecology 16, 3902 - 3925.
Holá D., Suda J., Kočová M., Rothová O., Salava J. & Chodová D. 2007: Endopolyploidy pattern and efficiency of photosynthetic electron transport in Kochia scoparia (L.) Schrad. biotypes resistant/sensitive to atrazine and/or ALS inhibitors. Herbologia 8, 71 - 83.
Kron P., Suda J. & Husband B. C 2007: Applications of flow cytometry to evolutionary and population biology. Annual Review of Ecology Evolution and Systematics 38, 847 - 876.
Leong-Škorničková J., Šída O., Jarolímová V., Sabu M., Fér T., Trávníček P. & Suda J. 2007: Chromosome numbers and genome size variation in Indian species of Curcuma L. (Zingiberaceae). Annals of Botany 100, 505 - 526. doi:10.1093/aob/mcm144